February 2008

Interesting Links (08-02-28)

There things sure are easy and kind of fun to put together so I’ll try another one.

Camera Tips from an Engineer
I’ve been wondering if companies (and consumers) have been concentrating too much on megapixels. This engineer thinks yes.
Explorer 1
It was the 50th anniversary of the US’s first satellite. I didn’t know they sent a Geiger counter up in it.
Happy Face on Mars
Not a whole lot more to it just a pretty cute picture.
Asteroid Almost Hits Mars
An asteroid almost hit Mars but didn’t. Now we don’t know where it is (although this was expected).
More Mercury Images
Some new pictures from the MESSENGER flyby. I especially like the annotated image to help out people (like me) that can never seem to find what people are talking about.
Henry Rollins on Evolution
Nice to see the Liar Liar guy seems to have his head on straight.
18′ Shark Surprise
Pretty cool video of a big six-gill shark.
Potential Presidential Science Debate
Sounds like a good idea and it’d be in Philadelphia so maybe I could go.
Evolving Virtual Creatures
Interesting examples of applying evolution to create virtual creatures that fulfill tasks like fast movement, grabbing a ball and fighting each other.

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Fiber Made Out of Viruses?

ResearchBlogging.org M13 virus from Chiang et al. 2007

With advancing nanotechnology, people often need to make custom fibers with special properties such as conducting electricity or sticking to certain substances. These fibers can be created using fancy synthetic materials and complicated chemistry. Or as Chiang and coathors suggest you could try to make fibers out of viruses after modifying the viral DNA to perform the desired task. I’m not sure this is actually all that much easier but it sure seems cooler and perhaps (hopefully) as things develop it actually will be more cost effective.

Procedure for creating virus fiber from Chiang et al. 2007 Viral fibers from Chiang et al. 2007

To put their money where their hypothesis was, Chiang et al. set out to make custom fibers from a virus called M13. The M13 virus is a bacteriophage (a virus that infects bacteria) that looks like a string (instead of the little lunar lander shape in all the textbook virus illustrations). Interestingly, it’s made up of only a handful of proteins; a couple on one end, a couple on the other end, and then a bunch of repeats of a single protien to make a long tube covering it’s DNA. To make virus fiber, the research take a concentrated solution of viruses and squirt it from a syringe into a bath of glutaraldehyde. The glutaraldehyde forms links between neighboring viruses to form a continuous fiber. The researchers found they could adjust the glutaraldehyde concentration, the rate of syringe ejection and how much pull was applied to the fiber to make virus fibers with differing characteristics. They even took the fibers they made and tested them in fiber strength tests. It turns out virus fibers are about as strong as nylon.

To really highlight the benefits of viruses, they also used genetically modified forms of M13 whose DNA coded for proteins that bond well with certain substances. By modifying the highly repeated protein forming the viral tube, they can make viruses (called E4) that really stick to quantum dots. They then used this virus to make fiber containing high concentrations of quantum dots (good for optical sensors [or whatever uses people come up with for quantum dots]). To really show off, they also found a modified M13 virus (p8#9) that showed high affinity to gold (much like my fiancee) and used it to make gold coated virus fibers (think microscopic wires).

When I saw that picture of viral fibers, I was pretty amazed. I’ve always thought of viruses as invisible and problematic (not helped by the fact that I’m fighting off a cold right now) but here these researchers are making real world useful things out of them. And they can manipulate the genetics of the virus to add custom special properties. It’s really cool to see how biotechnology is progressing.

Reference

Chiang, C., Mello, C., Gu, J., Silva, E., Van Vliet, K., Belcher, A. (2007). Weaving Genetically Engineered Functionality into Mechanically Robust Virus Fibers. Advanced Materials, 19(6), 826-832. DOI: 10.1002/adma.200602262

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WP_MonsterID Update (Hand Drawn Monsters!)

Updated MonsterID Icons

I just updated my MonsterID plugin with great monster artwork from Lemm who out of the blue emailed me with artistic very cool sketches of every monster part. I was just saying I wished I had gradients in my monsters and now I have honest to goodness hand-sketched monsters. Man the internet is great. The new version is a little processor intensive so it might take a few reloads to get all the monsters cached on a popular post but it will only happen the first time and things will be quick after that (and I set it so no one user should have to wait more than 5 seconds). They sure look great once they’re generated. Lemm’s about page says she does some freelance work, so if you’re looking for a great illustrator, it sure looks like she can draw.

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Gay Flies and White Genes

A while back (since I’m extremely slow on posting things), PZ Myers had an interesting post on a mutation that can turn fruit flies bisexual. Commenter Apikoros pointed to an even more interesting (i.e. has pretty pictures) paper about another mutation that turns male flies gay. Given the series of insect mating posts on here, I had to take a look. First a bit about the genetics. Fruit flies have a white gene which codes for pigment production (white [an absence of pigments] being the trait that is expressed in flies when the mutation is present). The gene is made of 2600 base pairs (the rungs of the DNA helix ladder) on the X chromosome coding for a protien made up of 687 amino acids. Interestingly, the protien is 58% similar to a related protien found in humans.

Scientists are often trying to insert new or modified genes into fruit flies. It’s usually difficult to tell if their gene has been successfully inserted so researchers add their gene next to an obvious marker gene. White vs. pigmented flies provide a good marker so scientists created an artificial white imitator gene called mini-white. Scientists stick the desired gene and the mini-white gene together and then insert them into white fly embryos. Any flies that grow up with dark eyes should also have the test gene. To allow even further control, scientists attach DNA that acts as a heat activated switch to the control gene. They can then turn on their target gene whenever they want by heating up the flies.

Now being able to flip a switch in an animals genetics is already pretty cool but now we get to the interesting part. Unknown to scientists, the heat activated switch activates genes on both sides of it. This means that after heating both the target gene and mini-white suddenly flood into the fly. This influx of mini-white produces some rather odd effects. To quote from Zhang and Odenwald, the scientists that noticed this:

Male-male interactions in fruit flies from Zhang and Odenwald

[After heating], transformant males displayed their wings in a spread outward and upward position. Close examination of these males revealed that many had protracted phalli. … Coincident with the extended-wings posture was the onset of vigorous male-male courtship.

The picture to the right shows some of this courtship. The arrow points to a poor ignored female. Again I think the researchers describe the courtship best:

Chain leaders frequently courted members of their own chains, creating courtship circles and lariats. The male-male courtship activities included touching partners with forelegs, unilateral 90° wing extensions (a display that was followed by the extended-wings posture), licking the partner’s genitalia, and curling the abdomen to achieve genital-genital contact. While participants repeated their courtship routines multiple times, no repelling signals were detected-i.e., wing flicking or face kicking.

Comparison of mutant and non mutant male-male interactions in fruit flies from Zhang and Odenwald

Since this was a pretty odd phenomenon, Zhang and Odenwald decided to investigate a bit further. As shown in the picture to the left, they looked at heated normal flies (left), heated mini-white flies (middle) and non-heated mini-white flies (right). Only the heated mini-white flies form the conspicious homosexual chains (the arrow points to females hiding in the corner). To test for pheremones, they tried pumping air from the homosexual bottles to the non-homosexual bottles and switching bottles but nothing happened. Interestingly, they found that even non-modified males would eventually join in the homosexual activities if most males (> 80%) in the bottle were participating mini-white flies. But that was likely a behavioral side effect and didn’t really help explain what was going on. They tried adding or removing different target genes to the mini-white and heat switch DNA but that did not change the results. They tested the children of homosexual flies and found that the homosexual trait associated with whichever chromosome had the inserted mini-white gene. They even fed mutagen to mini-white flies that altered the DNA sequence of mini-white and found that these broken mini-white flies did not exhibit homosexuality. So they are pretty sure they know that abnormal production of min-white can trigger homosexual behavior.

But they are unsure why a pigment producing protien could have such obvious behavioral effects. Interestingly, white protien is also important in transporting trytophan (yes the Thanksgiving turkey sleepiness protien [although that's mostly a myth]). A decrease in tryptophan has been observed to cause male-male mounting in rats and rabbits. In addition, serotonin (a product of trytophan) depleted cats also exhibit homosexual behavior. This led Zhang and Odenwald to hypothesize that abnormal influx of white gene expression was causing a depletion of tryptophan and serotonin and leading to homosexual behavior although this still needs further investigation.

So this was a pretty cool and obvious demonstration of how genes, molecular pathways and behaviors are tied together both in a single animal and over quite different species (and how can you not like a paper describing “courtship chains and lariats”).

References

S.-D. Zhang & W. F. Odenwald 1995. Misexpression of the White (w) Gene Triggers Male-Male Courtship in Drosophila. Proceedings of the National Academy of Sciences 92:5525-5529

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Rambo Review

The new Rambo

We still don’t have a TV so the $5 Saturday AM movies are pretty attractive for us. It’s a little weird to be heading to the movies at 10 in the morning but once you’re inside you can’t tell the difference and you sure don’t have to worry about a packed theater. So I was browsing the movie selection and saw “Rambo”. I figured they were replaying old movies but it turns out they made another Rambo movie (the first Rambo was called First Blood so I guess technically the name is still open). When I saw IMDB was giving it fairly good ratings, I figured we might as well go see Rambo. After all my talk about microformats, I thought I had better start using them more so this is in the hReview format (which actually shouldn’t make any difference to most readers).

As we were walking out of the theater, I asked Xiaofen how she liked the movie. She said “It was pretty fleshy”. After figuring out that she wasn’t saying flashy, I had to agree that that was actually a pretty good descriptor. Rambo went beyond bloody all the way to “fleshy” (but I’d have to say in an enertaining way).

Although the movie is pretty “fleshy”, excluding the bloody start you’re pretty much always rooting against the people getting bloodily killed. I think that kind of reduces the impact. That said the beginning was pretty hard to watch since it was just normal people. I suppose the movie was trying to get a message across though and it certainly does bring home just what news stories about genocide actually mean.

The special effects and stunts were very good. I’m not sure if it was the movie theater (you get what you paid for) or the movie’s style (perhaps in tribute to the older Rambos?) but the film seemed a little grainy and low contrast. That didn’t detract from the movie though. I can’t remember if there was a soundtrack or not so I guess that’s the best kind. The plot was pretty good (especially for a Rambo movie) and I have to say they managed to trick me near the end (avoiding spoilers).

The acting was decent although the girl seemed a little stiff at the start. I guess she didn’t have the most natural of lines though. Stallone did a pretty good job throughout I thought. I actually had to google Stallone to see how old he is. Turns out 61. I was guessing 50 at most. I hope I’m in that good a shape at 61 (or now). Although now that I think about it, I think he did manage to keep his shirt on for the entire movie (which I think gave him more chance for acting).

Rating: 4 out of 5

Scott Sherrill-Mix, February 2nd, 2007

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